Scaffold Ga0211516_10224881

Overview

Basic Information

• Taxon OID: 3300020413
• Scaffold ID: Ga0211516_10224881
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 857
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7593
  • Long. (^o): 14.3453
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011766	Metagenome	287	Y
F092221	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211516_102248811	F092221	AGGTGG	MAFEIKGFGEPSKFNFKNFQNFNNKPKKEGIYPRGSDGYQFESEVKFYNQDSLWTRWRRGYELYVMMQTLLGSTSKERDRRGDYRLFFTFQQFPGVFIPARIFTFPSKNKELGEHVCGMRDTDGFSFYNFGLPILAVRYLAPSVDATYQQNGTTLVVTKTDHGLYPGDNVFLDVSTGNAIDETLEIVSKTQNTFTV
Ga0211516_102248812	F011766	N/A	INQFFPLFVASIDSSQQTYSLTLNEILPFINHPTVQAGSNFGSANNEIAPKQRGLMLKRGQALYVAASGANALTNGFYCNVQGGFY