Scaffold Ga0211516_10079888

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211516_10079888

Scaffold Ga0211516_10079888

Overview

Basic Information
Taxon OID	3300020413 Open in IMG/M
Scaffold ID	Ga0211516_10079888 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1590
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_018
Coordinates	Lat. (^o)	35.7593	Long. (^o)	14.3453	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074044	Metagenome	120	N
F089434	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211516_100798882	F089434	N/A	MIKYRVVEEQILEEGLTFNDAVTVIEMLNEQGRRAKLEEYTVPSIVGLGRDPDLH
Ga0211516_100798883	F074044	AGAAGG	MIGEMVKFKDYCDEVYISKVVGIFSDKHENVKFLDKNVVYWSKKGKKYRKLKEKDMDSVYLEVESSRGKTDFITLDEVIT

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