Scaffold Ga0211516_10062739

Overview

Basic Information

• Taxon OID: 3300020413
• Scaffold ID: Ga0211516_10062739
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1841
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7593
  • Long. (^o): 14.3453
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F011410	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211516_100627393	F000720	AGGA	MTLIKENNKVRKEIPNRMMSATFALPIDERRVIGILDYTASDTGVTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEDIILGKQPDKKQRMLSTDPYAMKE
Ga0211516_100627394	F011410	AGGA	MKDLSIKVNWSTSNVLVWTVLGVGIGFCIVNLVTIYNIYTVIETMWLEIQQVKETNISLYQFIQEHSNDFN