Scaffold Ga0211516_10055142

Overview

Basic Information

• Taxon OID: 3300020413
• Scaffold ID: Ga0211516_10055142
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1990
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7593
  • Long. (^o): 14.3453
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211516_100551423	F005813	GGAGG	MKLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPTHEAMSWFRWAHDCMLRGQYKDAEAMLYKGLKDDRTTTSDG
Ga0211516_100551424	F006217	GGA	MIELLLAMVEEQNPIHKYCMDKHEHWTGRAACVQELRHAQRKMEVETLRQFLKDNPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGSDKVKRSKC
Ga0211516_100551425	F029123	AGGAG	MSYEVWFGKNGKWFGYHSFKYRMEAVDCELKYLNIFKDLTVEIRSRAHDH
Ga0211516_100551426	F027536	AGGAG	MIIKDNRRYNGGHWLYKVTPIDRVIHDSKRRADDYWWEGDDDEARLEEAYIKLYEQDREEGIEWVPNF