Scaffold Ga0211516_10014683

Overview

Basic Information

• Taxon OID: 3300020413
• Scaffold ID: Ga0211516_10014683
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4510
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7593
  • Long. (^o): 14.3453
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037983	Metagenome	167	N
F064200	Metagenome	129	N
F096207	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211516_100146832	F064200	N/A	MIYLHRVIVEDSEATWKIYWFNPGILSHRRHIKKIQDEIYKVFPNETYSWADPAHQCFGYHLKDNIIVTNVCGSNDENLHKNKRYVELKDQNEIYYNKDFVCFYYDLDNKKKWSEVYYRRDDNPEIIAKTKLDEGLNIEWMSEYYNDEFEKTGQNLFITGKCGDIYKWIDKQNPDIPKPFKNPINMNMDDRPQVDHINTENAIKCEYDTEGNLVKLKFFGCVLRTKMKVKGEFSHLELSSGYISSINNSEQTEIVETNYDDYGNRIPSTIIKRIDDYIFFPKARENGEYERVILKDM
Ga0211516_100146834	F037983	N/A	MFLHRVLIEDCKVLTRIWWFDPTKLSEVKFTRKVHEEINKVFPNETYTYPVNHIYGMNHDDNCIVFHMCSPEIDEMKTLERKCELKAQNNVLLGKAYIRYIYDMENKDKYMEVAYRDMENFGQENWPRSYKTGVPSTVKICTVSEFFDKDFNKIGESLLIHGYNNVQAVYDYADTLNKDLPKPIPVDKKVHKDDLFKFIFDMEGNLVKLQLYAHVDRVAIRNKGNTETEYKADYADCINNLEETEIVIPEYDTNGNPIRSSKPKDNEEYILFPKARDKEYEKVNFKDY
Ga0211516_100146835	F096207	GGAG	MEIKEVIINNKAIEKVSYYAIDKDDSQMLAIKNKIHAVWNNHFIDRRGHKRYIQSCFLDSADADVITIQTYYLEDDGTNLISILDASQVPSDLKSGLSTDRADREFHNDTQTIEVEYSSASLPFTLPSGVSFRRQTHNLNADYSDKGTYNVYVIGTVANVDSLVKSENSSLSCTIPAGYTLSATDSFKLLYNSSDELQSCTLTPQDSFPFFDENLPDIVMHNLLLDKENIWYTFDITNSTRTFEIPYVIGGVYPVEPLGANLNLMYITETYDSSFNNTNVQNVYVQGRLNDVYTWAKSLKSDITLPIPDNINKPDEVMFEDDGAYVVQESEFIGNDDMDYLLFEDATEGIDHNRCIILEQEILEDKDYFKFTFDSSDNLTSVKLIGHLQNQMTRSRKVRRRTQIEHNFKYQDAITNTGILATLVPDSAITLSVPKYDMNGFRYADD