Scaffold Ga0211516_10010654

Overview

Basic Information

• Taxon OID: 3300020413
• Scaffold ID: Ga0211516_10010654
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5493
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7593
  • Long. (^o): 14.3453
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007002	Metagenome	360	N
F093965	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211516_100106541	F007002	N/A	LKSVDNWIDGSNHKKGLPLTGSPEQLDLTSKDDKEGEINDNLKKCPSLLNFFGQWNSLAKCHAVNMNSGSFFRLHRDAYKTTQQLRIFIPLNKTELHEFAFIYDKNIVELKAGRVYMLNTKKQHGSFAMVDDIYHVLMGVYVNPHNFRVVTDLLPNCIDHG
Ga0211516_100106543	F093965	AGG	MNLTFLSASAYIKLDDFALCDIKVDSGWFGIHSKIDNYGLYYYLYKGSPKVGVAFENTSIDLTQGALTSTKTHLEKSIIIETSDDCDILIFNTLDKGQDWTGSLVTDTFTCDNDNSYLICLDGAPTVNSTTLQKFDYDKLTSGKEYSITLNGGVLGLFTKV