NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211552_10175649

Scaffold Ga0211552_10175649


Overview

Basic Information
Taxon OID3300020412 Open in IMG/M
Scaffold IDGa0211552_10175649 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001167 (ERX556053-ERR599047)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)758
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_146
CoordinatesLat. (o)34.6054Long. (o)-71.2317Alt. (m)Depth (m)640
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015023Metagenome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0211552_101756493F015023N/AIDLNDSVNDFMNHLNNNMDKPDGYSYDLVTRGSKYFKVVMNTRGSRSVYCFINKRNGEILKSAGWSAPAKGSRGSVLVPDSYTNSDWSGGWLYKIFGNSYNGSGNTIG

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