Scaffold Ga0211552_10067881

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211552_10067881

Scaffold Ga0211552_10067881

Overview

Basic Information
Taxon OID	3300020412 Open in IMG/M
Scaffold ID	Ga0211552_10067881 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001167 (ERX556053-ERR599047)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1185
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_146
Coordinates	Lat. (^o)	34.6054	Long. (^o)	-71.2317	Alt. (m)		Depth (m)	640
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025519	Metagenome / Metatranscriptome	201	Y
F029783	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211552_100678812	F025519	N/A	MKDNTWKIGEIKLSAMTYTFECDNKKCFKTIVCLLSKYDGQEYFGRCNYCHSGRLKWRKNIDLHAVLQKMGKGNVSRRIKSGD
Ga0211552_100678814	F029783	AGGGGG	MIGELSGDTADFLNEIPWFDGIIYIVLLMGLYVFYKWVNKKFG

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