Basic Information | |
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Taxon OID | 3300020412 Open in IMG/M |
Scaffold ID | Ga0211552_10003755 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001167 (ERX556053-ERR599047) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4566 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (82.35%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_146 | |||||||
Coordinates | Lat. (o) | 34.6054 | Long. (o) | -71.2317 | Alt. (m) | Depth (m) | 640 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003082 | Metagenome / Metatranscriptome | 508 | Y |
F004868 | Metagenome / Metatranscriptome | 420 | Y |
F020715 | Metagenome | 222 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211552_1000375510 | F020715 | AGG | MNQPTKRKKRTNNPIAKALKFFTPKRFKDKTKYDRKSYGEIWKRYLWKGL |
Ga0211552_1000375517 | F004868 | AGG | MKYVIILLLSVSGVEKIELKTNGLNCGEIANAWREVNTRYYDGPNQGNFTHDGKLMIGYICD |
Ga0211552_100037555 | F003082 | GAGG | MRYKTLKILRARRIAREKRSRTTRWMKYLVSSIIIGLLCLFSVGCNGVKHVISIEEPTDHTSGDDGGKLKYKIIFGDVNQKE |
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