NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211587_10080922

Scaffold Ga0211587_10080922


Overview

Basic Information
Taxon OID3300020411 Open in IMG/M
Scaffold IDGa0211587_10080922 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1431
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_042
CoordinatesLat. (o)5.9997Long. (o)73.914Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001504Metagenome / Metatranscriptome681Y
F031447Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0211587_100809222F001504GAGGMSYDTEHYYAVQSFLDDDELCKIWNIIEIAMNREGYDVENAELSMRLYDSELTENIESDMEHLL
Ga0211587_100809223F031447N/AMNQYVITGTKTFTYYKTVIAENIVDAHIKAHEPVDDPIDDWTCHFDYDYDEPTEDNGLMIVKHIEDEGEV

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