Scaffold Ga0211587_10042393

Overview

Basic Information

• Taxon OID: 3300020411
• Scaffold ID: Ga0211587_10042393
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2113
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 5.9997
  • Long. (^o): 73.914
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026408	Metagenome / Metatranscriptome	198	Y
F039876	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211587_100423937	F039876	GGAGG	MIYKSLFLLLFANMFNQSYQLQNITCPKWMPGTNEILPAGVTLAPELELRNRVRCYCEVVMPQERGCIANNVPKNLCKARTAAWVENNLLLREQLVQVRSPMPLPQRDRMINVEP
Ga0211587_100423938	F026408	AGGA	MSNRRGMTLLLVLMLGAFIGMSAMLLFSTTNLDMMIAGNNRRLNQAKISAASGLNHFTALRLNHNTLREQSRGLQTLQIIPETQLSPQTSYEVKIHFFPALNERQYVVESIGYYKKGGKTLSIHPVKALFEGGE