Scaffold Ga0211587_10031740

Overview

Basic Information

• Taxon OID: 3300020411
• Scaffold ID: Ga0211587_10031740
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2519
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 5.9997
  • Long. (^o): 73.914
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036472	Metagenome	170	Y
F037423	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211587_100317401	F036472	N/A	ARNSQEEVIANMPKQDGMIDLSKFMLFGGSYEDTSGKEGRRKLVRQLVGPGVEVEGSMKQNTETEDDLDANLVGDIIAQYEGQCEEIMNEYNNRMAQTYSDYEVQDDGGEGAYIRPFAAFIAKWPVDEWKRLPGNNEEVVWNSVDEVIAIYGDIFEDSNNYTPVIRRVREEIHLTMKINFEHPDIYGNSYMAMPDEYRDALQNIDSIIDDRRDAFEAILTDYFKREGQMEGGEYMNLAMAIEDGGISSYEWDLETDGQYSESYESTASHSFYYDPEEFGLDIRVLAQILDSRDFRIELRKQLLEEPRKDQNTEYYLQMNATTVEVGGEIKYTSIFSINADEPDIMANLFQELIEGTMDDEDNLNVIYKRVLAQFVKSRQPAFMQTNESIVRTWKDYLKS
Ga0211587_100317403	F037423	GAG	MQDPDFLFSVLAMMVKKNGGKITITEEEMKDVTKGDLIGMYYEPDTGSLILKQVDKEDMMQATSMVRDNVDKVYDN