Scaffold Ga0211587_10002485

Overview

Basic Information

• Taxon OID: 3300020411
• Scaffold ID: Ga0211587_10002485
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11824
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 5.9997
  • Long. (^o): 73.914
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019643	Metagenome / Metatranscriptome	228	Y
F052546	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211587_100024854	F019643	GGAG	MAKYYIKTGTLEVIFSTELEPFNACCRVIHECTPDDEVDEYMYCDERGYRDYTSADPDTFVVDTDHILRKEGYIR
Ga0211587_100024856	F052546	GGAGG	MFDNNKKKYFHTAAILILMSYIISGCTIIPTRNTVTLNKSIELDERAIEDVNIGVRLEWI