Scaffold Ga0211587

Basic Information
Taxon OID	3300020411 Open in IMG/M
Scaffold ID	Ga0211587_10001322 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020411 Open in IMG/M

Scaffold ID

Ga0211587_10001322 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16526
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (94.29%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16526

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (94.29%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_042
Coordinates	Lat. (^o)	5.9997	Long. (^o)	73.914	Alt. (m)	Depth (m)	80
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_042

Coordinates

Lat. (^o)

5.9997

Long. (^o)

73.914

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F014071	Metagenome / Metatranscriptome	266	Y
F022555	Metagenome	214	Y
F026042	Metagenome	199	Y
F028524	Metagenome / Metatranscriptome	191	Y
F043975	Metagenome	155	Y
F047373	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211587_100013221	F022555	AGGAG	MAITPKFKPGQLVRYNNGDYGFVGLVKSTQFARRRGDPVFVLVQWCAKYRQREEYIPQKDLILVEAV
Ga0211587_1000132218	F043975	AGGAG	MPHRPKKGDLVYLPSDITLIDDFTVKKWIKLEEPTLAVMVEPLINQEDIYHKVHVKGSDWYVRTIDTLEVMSRA
Ga0211587_1000132226	F047373	GGAGG	MITNQKIEIGDVEYSKLSHVLRFTVAANSDAIRTVEDICGRSDMTMEEIATEMAKLLQTALHTNYHRGGMRIRYD
Ga0211587_1000132230	F005620	AGGAG	VTEEETLTKQIETFKTFCKNNRLRLREDGDGLPVARAIGKFKHDQFFCNFKDGTIGVYVSRDTQRQFTYLNKKLIKMGCAPTQLGDFEASYDLEWMNIPPVAKLLKIKKGAAKVKDPKWLRENG
Ga0211587_1000132232	F014071	AGGAG	MAKRPGRLLDQTFTSFTEASGRLEDTIGWVTKAKDLAHEFEPGCKAEVTLHLLEEVLEKAGRELERASSELATEVFGDK
Ga0211587_1000132234	F028524	AGG	MTNINNEFKATVKEFVNKLTTIENEMTILRQDRSELFGEMKEKLDPRSFRAAIKIHNLQKSTPDQTSLHRILEVLETSE
Ga0211587_100013228	F026042	GAGG	VTFNVMTLLQQEGYITEGEDNLLHAEKAFFAARVMLWIREQVRTDPDFNLTAYLTMLMYYKTDVADLKFTEDGSKLVYRMRNNDKEVQELVNSLIKSSSKSSDQPPSADKTSDGDAQDPSEDSDA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211587_10001322

Overview

Ecosystem & Geography

Associated Families

Sequences