Scaffold Ga0211587_10001258

Overview

Basic Information

• Taxon OID: 3300020411
• Scaffold ID: Ga0211587_10001258
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16995
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (82.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 5.9997
  • Long. (^o): 73.914
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F018286	Metagenome	236	Y
F041168	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211587_1000125813	F004771	GAGG	MIKKGDLVKMVTHDTGLLGIVVEMHPRGAGRTAQVGIRWIGGSGKVDWEPQAWLEVVSES
Ga0211587_1000125817	F018286	GGAG	MTHLTTFILVGMIDSFDPYFATVELNTTPASNGGPSIAVMPVAAFPCEIHEGKVFYVVKLHENDDATIVCQKDVKHEPGTRKTD
Ga0211587_1000125823	F041168	AGG	MKQSKVRRHTVGFFRNDAEVPFINLEKFETITAATSIPHYWRDADGNVSQFWHAGVIPKGTGVVCTHRERGMKHTFWTVTDPESELVGKVFVVGHTFKDRKEDEFEKFEYSNISPTLKYSILAEKPLTS