Scaffold Ga0211587_10000222

Overview

Basic Information

• Taxon OID: 3300020411
• Scaffold ID: Ga0211587_10000222
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39193
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_042
• Coordinates
  • Lat. (^o): 5.9997
  • Long. (^o): 73.914
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F012507	Metagenome	280	Y
F026439	Metagenome	198	Y
F037423	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211587_1000022210	F026439	AGGAG	MASQLDHVILYPDAVQQFEDCILPMIQEDEKNLGHVDIPARSEAWSNFADSLHANEQISDWQVANWEHPDCCND
Ga0211587_100002222	F012507	N/A	MCMWTDKLKVGDLIYSVSDGKPAIVLDKEETARAKYGDIANKRWRFKLHCDGEQGWLDEVRLRAHYDLP
Ga0211587_1000022226	F037423	GAG	MQDPDFLFSVLAMVVKKNGGKITITDAEMKDVSKGDLIGMYYEPKSGDLILKQVEKKDMLQATNMVRDTNDKIYDN
Ga0211587_100002228	F008590	GGAG	MQVGDLVTYYFQRTRWLKGQSVHVGLIIETGKYTGNKDVKVLWKLMNDDDGGKSYTATEASQHLSLVDDSLTT