Scaffold Ga0211699_10200153

Overview

Basic Information

• Taxon OID: 3300020410
• Scaffold ID: Ga0211699_10200153
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 763
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0675
  • Long. (^o): -35.3923
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008049	Metagenome	340	Y
F010274	Metagenome / Metatranscriptome	306	Y
F099138	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211699_102001531	F008049	AGGAG	MSQHNQLNWSDFLLCIGMELAFHKNGERPIQEQMIAEKM
Ga0211699_102001532	F099138	GGAG	MSYSADSNITLCYNNDKAFIYRLIRIDGEVDDWHAIDLEVNACYLNDDTKYIGLTSNPVKRAQYHRTKKGKDLVMQIFRIANSPAQAKYYEAEAIYKFEEKFGNVPEFSKGGDTFAGA
Ga0211699_102001533	F010274	GAGG	MKRRNEILNTLEQMVDSLYELGHADAQYFEEIIGETMDIVMEYDE