Scaffold Ga0211699_10010850

Overview

Basic Information

• Taxon OID: 3300020410
• Scaffold ID: Ga0211699_10010850
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3710
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0675
  • Long. (^o): -35.3923
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013777	Metagenome	268	Y
F043451	Metagenome	156	N
F064809	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211699_100108501	F064809	N/A	QILPSSLVHDMTLPKTVLCTPYMEISMLNTTLTGNITFTEIVEKDDKVENPFLKIVVAVNDVNDNGVTVIVRTKNGLLEAARNGEDLVGIRVVINGTIDLASISSHWMNDEGGLVARKKPQFRLFANSIERMNRKPAPQAIQPELAVS
Ga0211699_100108503	F043451	GAGG	MTTIQPWLYPNNPSVDRIVYIPLQSAHILEYQEEMIDAEGNVYWKTVDSTTIGGATSVKEFLEQMKDFYESKSCRKDRML
Ga0211699_100108508	F013777	GAGG	MTTMLGPTSIDHFKNLHDHYLKKEPIVHAYATPYHDDPADNPAAMWSFVMHEKRDLERIPFKSYIHPQGDFYNGYYDICDIEKGTFDCDNMRLGEVYPVILYAHHETMLTVGCVVRTSDHPDIVTGEEQLALWIYYPSAENIESFDMASGHIYK