Scaffold Ga0211699_10010542

Overview

Basic Information

• Taxon OID: 3300020410
• Scaffold ID: Ga0211699_10010542
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3778
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0675
  • Long. (^o): -35.3923
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016734	Metagenome / Metatranscriptome	245	Y
F036473	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211699_100105424	F036473	GAG	MIVGLSNLKSILLDKVCEVKFARRNPKPGRPSSRRMLCTNNVQLLNSVEGRTVLNYRPPRQAPKYNPNQENLIITWDILMQGFRTINCDTVDLISTLDADETFWTYLSQNIAPMSAEEKMNFMNV
Ga0211699_100105425	F016734	N/A	MNNKQQKAYDAQLDKMDLSDSERDAFDHSAKRSLIDLDTYQNTDQFSLHGYKLSKVMDDIVLAQYADLADDGQTIERNGIYIPLSQVQRTWRIARVILAGPACKYSGVGDIVCFPDDKGVKVDNITVAGFDSPLRNCLFLSEQRFFGVCEQIDQDDSRTE