Scaffold Ga0211699_10001321

Overview

Basic Information

• Taxon OID: 3300020410
• Scaffold ID: Ga0211699_10001321
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13186
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -21.0675
  • Long. (^o): -35.3923
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F012285	Metagenome	282	Y
F013522	Metagenome	270	Y
F023383	Metagenome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211699_1000132123	F023383	GGAGG	MIKLKEILTESIPDYFRGYFSNIDDNMERLEKNIKQLIKDLGKDGLRKESLEVAALYKKHIIEFKVKMKNFERKYRD
Ga0211699_100013215	F002249	N/A	MKYKSYPYTVPINHKALQHTRIKELQVRMMKWISWYKDEKIRNRTVDKDKWQHRFQFTLRCQERTGKLTKGELQQLNHYWKVYEEGKHT
Ga0211699_100013216	F013522	GGA	MKKENILKRIEKLSKLCEETEPTSNELLNMDKLFSQDLIDVDEFYLIIKNDDCSRDQLIDIMKECNWIWKRRLKVKDIGWDEYNHIDRKIEESLRGGRKIEAIKTYRKHKIDNGGDCGLKEAKEHIDKLVIKMGLD
Ga0211699_100013219	F012285	AGGAG	MYHNDSKSFLLFGKQMNQIIAILQMVSDKNPDIQKLNEFIQYLKDMIPYEDMLDSFVFGDQETMPDEVRPVGSKDAMTLEEMMDDLQLRFMDKRNGSN