NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211472_10098508

Scaffold Ga0211472_10098508


Overview

Basic Information
Taxon OID3300020409 Open in IMG/M
Scaffold IDGa0211472_10098508 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1153
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_031
CoordinatesLat. (o)34.835Long. (o)34.8033Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007390Metagenome352Y
F018268Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0211472_100985082F018268GAGGVEKKDVHVKVLYDYPTIEGMIYKDTKIKVNESDFKTLTHDEKVKGVTDVGKIVWVPRKLLKEIK
Ga0211472_100985085F007390GAGGMKKLLILLFTTIGFSQTTFTDEEIINLENEFIYLENMVDSLSYQDSLKALMIETLKLEVNLSNEEIKLLDEQLKLTEKKVKLVKPSWFENKWLYFGYGATLGVSITLLINQLSDAIDIF

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