Scaffold Ga0211472_10052359

Overview

Basic Information

• Taxon OID: 3300020409
• Scaffold ID: Ga0211472_10052359
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1589
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_031
• Coordinates
  • Lat. (^o): 34.835
  • Long. (^o): 34.8033
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033839	Metagenome	176	N
F043451	Metagenome	156	N
F064809	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211472_100523591	F033839	GAG	MNNLSPITRAFLTVGIGVFIGTLPVFMIINSLSNTAIKLCGRYGPDYTIVNLDTPLGTIKRCVAKD
Ga0211472_100523593	F043451	GGAG	MPNIQPWLYPPHPSTDRVAYTPTRSAHILEYQEEMIDAEGNVYWKTVDSTTLGGATSVKEFLEQIKDFYESKSCREDKML
Ga0211472_100523594	F064809	GGAG	MLNTTFTGNITFAEIVEQDAKVENPFLKIVVAVNDVNDNGLRITVRTKNGLLEAARNGEDLVGTRVVVNGTIDIASIRSHYVNENGELVALKQPNARVYANVIERLSKKAAPATPTQTELPVH