Scaffold Ga0211472_10043787

Overview

Basic Information

• Taxon OID: 3300020409
• Scaffold ID: Ga0211472_10043787
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1742
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_031
• Coordinates
  • Lat. (^o): 34.835
  • Long. (^o): 34.8033
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058913	Metagenome	134	Y
F080142	Metagenome	115	Y
F089953	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211472_100437871	F089953	N/A	IHEGYEIYKVTLDDNVEIVIKYAIRERSCFADQDLKLVRHNNMSFFPTLEDAEKALYEIVQKRFEEQSQ
Ga0211472_100437875	F058913	AGGAGG	MKLNKEEVKFLLDKWNDFYYYFDVESMYQKDQEIFRKIGQKLSEVKQ
Ga0211472_100437877	F080142	AGGAGG	MKVGAGEFIKKDSGEVIWGSEAFIDEVFKALYGNEYEYEIWSYNDALQKIKNLVQLAEDN