Scaffold Ga0211472_10033948

Overview

Basic Information

• Taxon OID: 3300020409
• Scaffold ID: Ga0211472_10033948
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1982
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_031
• Coordinates
  • Lat. (^o): 34.835
  • Long. (^o): 34.8033
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F014553	Metagenome / Metatranscriptome	262	Y
F105145	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211472_100339481	F105145	N/A	FDGVILDEYDREVHKVDGKPYNITFDRSRLEWSCSCPAFTYRRRFKTSKCKHIVQIQNERFEKLTKRNK
Ga0211472_100339486	F014553	AGGAG	MSKNKTKGQWKDYKTFTLEDGTKFIARDEKDAELYRKKVGK
Ga0211472_100339487	F003091	AGGAG	MTLKPMKKITKPGEGKPRQKYVSQERYLEERYKISTGLQGPKRQEGESYEDYKIRRKAENGLLKEYLRGVWVKDD