Scaffold Ga0211651_10270252

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211651_10270252

Scaffold Ga0211651_10270252

Overview

Basic Information
Taxon OID	3300020408 Open in IMG/M
Scaffold ID	Ga0211651_10270252 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	647
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_109
Coordinates	Lat. (^o)	2.0596	Long. (^o)	-84.553	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211651_102702522	F018906	AGGAG	LKTCKVNPLKLNETRFLADVHNKEGRYVKRYFFSNGLGASVVCHDGSYGGHAGFFELALMKYKLGADPEITSKIIYDTSINRDLGVNDVLAWLDFQDVADKLMEIRNYNTGEYAINE
Ga0211651_102702523	F012114	N/A	YNCVFPEKRPRNIWVVVDAHNGRKIGEVAAMSESEARIKVSQHVMIPFTLSHIEE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.