Scaffold Ga0211651_10199058

Overview

Basic Information

• Taxon OID: 3300020408
• Scaffold ID: Ga0211651_10199058
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 781
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0596
  • Long. (^o): -84.553
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002883	Metagenome / Metatranscriptome	523	Y
F010476	Metagenome / Metatranscriptome	303	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211651_101990581	F010476	N/A	MFDYKITAYNKLGKVQEVENLFCAPDEIDGVMYDMSEQYGYAEAFDTMNTHVGEYGIRPLSLGER
Ga0211651_101990583	F002883	N/A	TQEFPTMSTLHHEDLLLSIFDEVCEAFPYLDEDKQIEIANARFEDLCQ