NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211651_10199058

Scaffold Ga0211651_10199058


Overview

Basic Information
Taxon OID3300020408 Open in IMG/M
Scaffold IDGa0211651_10199058 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)781
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0596Long. (o)-84.553Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002883Metagenome / Metatranscriptome523Y
F010476Metagenome / Metatranscriptome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0211651_101990581F010476N/AMFDYKITAYNKLGKVQEVENLFCAPDEIDGVMYDMSEQYGYAEAFDTMNTHVGEYGIRPLSLGER
Ga0211651_101990583F002883N/ATQEFPTMSTLHHEDLLLSIFDEVCEAFPYLDEDKQIEIANARFEDLCQ

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