NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211651_10127546

Scaffold Ga0211651_10127546


Overview

Basic Information
Taxon OID3300020408 Open in IMG/M
Scaffold IDGa0211651_10127546 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1030
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0596Long. (o)-84.553Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004144Metagenome / Metatranscriptome451Y
F007002Metagenome360N

Sequences

Protein IDFamilyRBSSequence
Ga0211651_101275462F004144N/AMRNIFKESKYHLEVETGWTYWFHLKHSLVNSYKLIKISFKSLVHGLLPFMWKADAPKDVILLYHEIMKIQHIQKLDKLRKYPKNERYISNDTE
Ga0211651_101275463F007002N/ALTNSANIQKMNDTYLTILNSYGDIVELDYQFDVPSIIDELKSVDNWINGTNNKKGLTLTGSVDDLELTKRNDSSINDNLKKCPSLIDFFKLWNSLAKCHAVNMNSGSFFRLHRDAYKTTQQMRIFIPLNKTELHEFAFIYDKNIVELKAGKPYLLNTKKQHGS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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