NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211651_10122325

Scaffold Ga0211651_10122325


Overview

Basic Information
Taxon OID3300020408 Open in IMG/M
Scaffold IDGa0211651_10122325 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1057
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0596Long. (o)-84.553Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011405Metagenome / Metatranscriptome291Y
F071143Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0211651_101223251F011405N/AMKVLIKPQVTKPWSKEMYDYNDKVADLMKKNILTSIHTNRNNWDNLNELMVLCGGIKYGEGYNIDDLYLDVNKEVENVQNYWLHEEYPYAVKQGLVEPVLYDFVGYDK
Ga0211651_101223253F071143N/AGYKKFKEIKKWYGSSDFEIGYDSDGLTLRFGYWKKIDMEELSDILPGYFTLTENLVDDDEDCGELYNYTVTREYNL

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