Scaffold Ga0211651_10110083

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211651_10110083

Scaffold Ga0211651_10110083

Overview

Basic Information
Taxon OID	3300020408 Open in IMG/M
Scaffold ID	Ga0211651_10110083 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1129
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_109
Coordinates	Lat. (^o)	2.0596	Long. (^o)	-84.553	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024330	Metagenome	206	Y
F101313	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211651_101100833	F101313	N/A	MGGGFKRQFKVGDEVCHTNKFSTGNNFKRKRKGVVLGIERRPVSDGKLRTYIQVLWDTSSVPCFHASHALLHLSEREDDIKEASKCIAN
Ga0211651_101100834	F024330	N/A	YLHTPTPNTRPKKFTKYAYVVKNTVAWDRTRKKYVVLEGKGRQETTPIALLHKDINKAYQDACEQCKWSKMAKEARTMYIIDGSYVSPNEIKRMRSLP

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