NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211651_10041605

Scaffold Ga0211651_10041605


Overview

Basic Information
Taxon OID3300020408 Open in IMG/M
Scaffold IDGa0211651_10041605 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2071
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0596Long. (o)-84.553Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009778Metagenome313Y
F026877Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0211651_100416052F009778N/AMIYLKDILLEAKVAHTQKSLQWVYHGYIAMTPKVMKQIMGDVPITTFHNLDWFAIQNQLPKVLGSKKSISTYTGDTSNRLSKGGGVQTKGGVVLEVEGKVLVAGTEDLGSVPDESGRRWLAPEVLGKILGMKELQGAGSGQKYKKELYKIDKKLEDLLYKYKTSLLVLPEDPQDVKDRFPMYSGKQKAELIKRWIDASNKFLLKNKKKIRKSFQDNINNPKITTFMTKLGYNELLVYDVKVKDAYIVIDILGDPNDFEATESVLKKIKKDLKRYTKGKIFTGFADGVKKFVKQRGGKV
Ga0211651_100416054F026877GGAGMKTITLPDGTKEHTLPKWIGIQKPGEPMVKTKWRRTDMEYHNINGYTQMRNSIGNFTCTCKGYIFRKKCKHIEE
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