NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211651_10005068

Scaffold Ga0211651_10005068


Overview

Basic Information
Taxon OID3300020408 Open in IMG/M
Scaffold IDGa0211651_10005068 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7601
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (56.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0596Long. (o)-84.553Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013777Metagenome268Y
F024330Metagenome206Y
F038198Metagenome166Y
F101313Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211651_1000506816F024330N/AMSQNDQVPAGTENYPVNNYIPKSNPNSRPKKFTKYAYVVKNQVVWDRLHKKYVVMEGKGQPETQPIPLLHKDNRKAYEDACDVCGWSYQAKEARTLYVTDGTYISPTAIKRMRDLA
Ga0211651_1000506817F101313N/AMASALKREFKVGDEVCHTNKFSTGNNFQKRRKGVVLGLEKRPVKDGKLRSYVKVLWNTSSVPCYHASHALLLLKEREDAIEEASKLIAN
Ga0211651_100050683F013777AGGAGGMPTYWGLTSINHFKNLHDYYLKKNHIVHAYATPYHNDPADNPAAMWSFVMHEKRDLERIAFKTFIHPQGDFQNGYYDICDIEKGTFDCDNMNLGEVYPVILYAHHETMLTVGCVVKTSDHPDIHGKEQLALWIYYPSGENIESFDMASGHIYE
Ga0211651_100050685F038198N/AMTLEKVTLKNVKVTINFDIDLDTLRRFLETKEADKDDVMAIYDMICTQSDRLNEQGEPENIRAYFDIDPETFVLLEQQVKSDLKKSYVTDSDHPHLRRIK
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Institute for Fundamental Biomedical Research
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