Scaffold Ga0211651_10004854

Overview

Basic Information

• Taxon OID: 3300020408
• Scaffold ID: Ga0211651_10004854
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7793
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED202 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0596
  • Long. (^o): -84.553
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027527	Metagenome / Metatranscriptome	194	Y
F068896	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211651_1000485413	F027527	AGG	MAQSITEVILGTGNLFVANESDLNGSSPNATFPTTPADTPSASYWDNIGYSEGGFSLEYDKTFEDVMVAEEIDPIKTIKTAQEVRITGELAQASLRNLKFAMAGGTTTADTPSAGYTELVPPTTDSFEEKGLLLRVNAPGNDEAGTAKLRDIQVPRAVNIGAFSMVHAKAPQKVTITIEYKVLKPNSDAPFSNIFKVIDTV
Ga0211651_100048546	F068896	AGGAG	MIAECMLFLASFSTPLIGSETQFVQQSLECRREIPSSMRKYSDLYLEFFDFENIDTAVRIGWCESRGKDTAYRDDNSDSGVMQFVPWTWNWVAEEYDLPRWNEWVILRHGRPYEGPTSKSSHGFEQTKVQFTPYYNIMFASILAEDIYGRTQWRDWNSSKWCWEDAKDWERRWKREQY