Scaffold Ga0211575_10196118

Overview

Basic Information

• Taxon OID: 3300020407
• Scaffold ID: Ga0211575_10196118
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 840
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.3379
  • Long. (^o): -127.7376
  • Depth (m): 650

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033960	Metagenome	176	Y
F079211	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211575_101961181	F033960	N/A	MKSYEATYTNESPQEYPNGKVTLHRRNTDARVKHPVPMGTYHIMNWHTYSDIGQDLETVQVWNPITKRLFEIYSTNEGETFTFDRMF
Ga0211575_101961182	F079211	AGGA	MSYPVCYTRRMKNMKNKIKTYRVEFTTAFAGSPYIEILLEAKDEHQANWVARNLCRFGYISKTEVTTNRPDYTEATHDWAYDVDYEVYS