Scaffold Ga0211575_10171704

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211575_10171704

Scaffold Ga0211575_10171704

Overview

Basic Information
Taxon OID	3300020407 Open in IMG/M
Scaffold ID	Ga0211575_10171704 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	903
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.3379	Long. (^o)	-127.7376	Alt. (m)		Depth (m)	650
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050421	Metagenome	145	Y
F079211	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211575_101717042	F079211	N/A	MKTYNVEFTTAFAGSRYINIVLEAIDSHQAEWVARNLCRFGYISNTTVTDEVAAYTEKTHAFAYDEDYEIYS
Ga0211575_101717043	F050421	AGAAG	MTIENKTLKVGDEVRFGMQLMIVDEITEFNTIIAIDEDGQDFELTENEIDIY

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