Scaffold Ga0211575_10004699

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211575_10004699

Scaffold Ga0211575_10004699

Overview

Basic Information
Taxon OID	3300020407 Open in IMG/M
Scaffold ID	Ga0211575_10004699 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6226
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.3379	Long. (^o)	-127.7376	Alt. (m)		Depth (m)	650
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025055	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211575_100046998	F025055	AGG	MSYFRNSAGDKKIAKATYSDSQMIEVLGGTVKKIFNYEGEDNVTFLKNEVFWLNYLKSKWVPELLEVGKNYVITSYYGPDLTKVHHLSRPKDLANQTLEMYRFFKDKNVFKLNGALRNMTLNKGQLVAFDFKHARFRTNKYIDYEIFSYEKWLSKIDNELVEKLKLLI

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