Scaffold Ga0211575_10000545

Overview

Basic Information

• Taxon OID: 3300020407
• Scaffold ID: Ga0211575_10000545
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18606
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.3379
  • Long. (^o): -127.7376
  • Depth (m): 650

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068146	Metagenome / Metatranscriptome	125	N
F096078	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211575_1000054511	F096078	AGG	MSKVHLLSEILGKLENFKTQEEKFELLSTYQKEPILKKILTIAYNPWIDFGMQDFTPKRHGKKFGMGLTKFLHLLTDIIDEKFDEKEKLFSCNMAMMHIEERDADTFLKLLRQELELGLELETINRVWPGLIMIYPVSDPTPDDYKTFGFYPAAVQPISRGFRVNVIIHKDNVLYKDKLGNDIKGWEMYDEQFKNLAQSNSTVFDGHAVVANGTVIVETNNEKVLEAEPENIRFNFWDVIRYDGFIKGEDTRIGYNWRHNGLEHMCILAADKNKVPCYDIVKADLVGSDEQLELTVEKYKYKCVIKSLDGTWTHGEDPSQIIYDS
Ga0211575_1000054520	F068146	GGA	MKLDNSSYTVTPPDLYMTEHGISILISSINDDLVISIKELFEKLIATSIVFLVQGKKTNSGTLPWMWNNSTTCDFMVIDIDTCAWEDIMAGLLKSKDKQNTVLFFSDKYKRRETVKLINATGTNLVVRSIEDINNYIRLQMSPEYINEA