Scaffold Ga0211668_10111794

Overview

Basic Information

• Taxon OID: 3300020406
• Scaffold ID: Ga0211668_10111794
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1133
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. KYW1333 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_099
• Coordinates
  • Lat. (^o): -21.1556
  • Long. (^o): -104.8217
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064404	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211668_101117942	F064404	N/A	MINFFGFFKETNHIGISSVGFDKSAIYLRNRDFRIVELFGLKENEELNLLYENEEPFWITKDHHLEISSLLSENDYTPFTHVKIELADGGNINYSAASLYVKFPDGEDIKSKTIMLLETMGYYAAEKIFNFCAENPGMYLLEFVLGMQPKDITDQFERMKSHTEYINNEGYLED