Scaffold Ga0211668_10035112

Overview

Basic Information

• Taxon OID: 3300020406
• Scaffold ID: Ga0211668_10035112
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2327
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_099
• Coordinates
  • Lat. (^o): -21.1556
  • Long. (^o): -104.8217
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F001416	Metagenome / Metatranscriptome	699	Y
F002192	Metagenome / Metatranscriptome	585	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211668_100351121	F001416	AGGAG	MPLVKKRLSVAAGATSDQVLAGTTYEYVDPGTRIVVASAVDTAGTATADTTMDFTVNNAEFSKNASVSALVTGE
Ga0211668_100351123	F002192	N/A	MHYVLLYSSLFVAFLALFMGLYACGRVAKVNLATKDLDWDAIANITGDLATTKKTIQTLNNRINGMHSPKIAEQELLMQLMANQQQKPNGKMRGG
Ga0211668_100351125	F000754	N/A	NNAEFSKNASVSALVTGEPFGWNGNYVMNDMVTTGQVRNRPIITFTNGTGATRTIDVAVFIGG