Scaffold Ga0211668_10007822

Overview

Basic Information

• Taxon OID: 3300020406
• Scaffold ID: Ga0211668_10007822
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5699
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_099
• Coordinates
  • Lat. (^o): -21.1556
  • Long. (^o): -104.8217
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019153	Metagenome	231	Y
F062838	Metagenome	130	N
F099140	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211668_1000782212	F062838	GGA	MRDTKVIIYCHRPQREAPLASVRYTKYDDLNRVIDVDQIDYEDKNYFHSEVLQAIACGVDVLIYTHLDGVSLQKKIQRWT
Ga0211668_100078224	F019153	N/A	MEDDGFMKMIHTELSPEAELTMELRCREVMACEDTDILKAFCIDMMKNHARAEAVLSKAMMKVIELEATLAVLQIRAKKSTGIYKVRWWLEQFYMHLKYRHITKRYSHRA
Ga0211668_100078227	F099140	AGGA	MTTKKLYKIKTQSTLYEVFEVEAESYEKALDLMLPTIYDGQDCSAYPVDVERVGWWFDGYGKTVLDQDEEHKGLFGIPITEEEAEKTPYYDLVKTEGSFPGDYREPTEEELIADSKLSV