Scaffold Ga0211668_10007201

Overview

Basic Information

• Taxon OID: 3300020406
• Scaffold ID: Ga0211668_10007201
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5974
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C620 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_099
• Coordinates
  • Lat. (^o): -21.1556
  • Long. (^o): -104.8217
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F018189	Metagenome	236	Y
F047122	Metagenome	150	Y
F088913	Metagenome	109	N
F092069	Metagenome	107	Y
F099447	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211668_100072011	F047122	AGGA	MKCPKCKRKAKASGTRFIEYSHAQRRIRTCECGFKFITYERIETDKQDFGQHSKEKKKDFYRKVLKDLIEDLEGRT
Ga0211668_1000720110	F018189	N/A	MELSKKQMEKVIEELESSYNSKIFDDENLIEIINLFKNYLNKGES
Ga0211668_1000720115	F092069	N/A	MTTVIFEYNGKSKEIPINQIKSVNDVADAYEKLGLKSKKPIKSTEKVFVKKRLYYFLPNGKYHSFLSNKNHKYAVCCTEKDTKIGGDYTDNYEKAKIKVADLNNKMNNPEYGYRKWVVVDIKEVK
Ga0211668_100072012	F088913	N/A	MTVPSQPKYKVNDRVRIRQVLKTSNRHVMINGKYISAKIRKGVIKEVTLKQNSCGAKIPHYQVLWDHQSRPSLVSQHRIELENEVSKM
Ga0211668_100072014	F006793	GAG	MTNTRSTTEEKEQRINYAADELAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPILTQSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSARESEGDYLFRNFSEIAKKKKKHGDLDSLDNVTDSGIPF
Ga0211668_100072015	F016820	N/A	MTKKEFLYLVFSSCGDNVQEIHGVYKDLKGASYGVISALSTLFPKHGDEAKIIRCEIISTEEAQIQYDKANPKDIFEKCEDDYCPMPTPLTQEVS
Ga0211668_100072016	F012584	N/A	MKLKPYLPEDVFILSDEELPKEHHTDRFGKVMVFRKDLGWSVILLKEVYTYFKHMKHTHWTYTPDTPHD
Ga0211668_100072017	F099447	N/A	MSYQQTEGDKADEKLLRTLLSKRMPKKDADKIINHCFSDLIKWTYDDAIFQLTHIFSFTDKECEQLLKEYDILSTTTEDIPMNPAPNFHATAPRDVRYLADNLWKARKHIHDAKKLLSSTALTRDDYDNQKDFQEAVVQRANVNFHFISITKYIDEMSEYTKGYMPPLK