Scaffold Ga0211668_10000330

Overview

Basic Information

• Taxon OID: 3300020406
• Scaffold ID: Ga0211668_10000330
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28758
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (69.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_099
• Coordinates
  • Lat. (^o): -21.1556
  • Long. (^o): -104.8217
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F042374	Metagenome	158	Y
F066846	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211668_1000033035	F042374	GGAG	MKKSKLIFTLLLAVVIGGCSSMPIVDSRGKSSANIKGDMNRFHDDYYTCKSLVQDQTSYVWDKSKAVYNGLRWRVLWLSPKANTRKDFINRCLEGRGYNVINK
Ga0211668_1000033039	F005751	GGAG	MTDIYSLQFNPQKISHKQEELGMIFADLDTACELMKKEEKMIIAELTLQFSRQKMYKNMKELDGLIYNHKKFRDFANRYSETLKKRNRAKIRFESFKAFRDDLRTKVVNERELAKHNL
Ga0211668_1000033044	F066846	AGGA	MLEVITFTMYLITITDIENPNVEVHRLVFDNHAECIALATAINQVRDPISTKKNCRSVKNYYWELP