Scaffold Ga0211668_10000014

Overview

Basic Information

• Taxon OID: 3300020406
• Scaffold ID: Ga0211668_10000014
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90461
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (65.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_099
• Coordinates
  • Lat. (^o): -21.1556
  • Long. (^o): -104.8217
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027682	Metagenome	194	Y
F064639	Metagenome	128	Y
F097124	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211668_1000001416	F097124	N/A	MTISEKLKEILQTLIKAEEDAIKCESGNASAGRRLRKASMAVIKELKDLRAQVLEQNKK
Ga0211668_100000142	F064639	N/A	MVGKTAIKDDYFKNTKTYSSNKNYNLKNKLLKEKKIDNDFLEKLKFIKLEELITLKLLVATSTLRGKIFNFPILKFSTEICKEAVLRFALSQANSKREALLILGLKRADLSYYLKKYNLEKDFNYDSKTRKDR
Ga0211668_1000001462	F027682	GAGG	MELTKRRLKEIIAEEMSHLAETGDLNMITEAEKKAFAIILEKLTPNQLKDLGLKKI