NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211496_10071925

Scaffold Ga0211496_10071925


Overview

Basic Information
Taxon OID3300020405 Open in IMG/M
Scaffold IDGa0211496_10071925 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1250
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_062
CoordinatesLat. (o)-22.3407Long. (o)40.3444Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007697Metagenome346N
F016883Metagenome244N

Sequences

Protein IDFamilyRBSSequence
Ga0211496_100719251F016883GAGLIEKSEENTNKSNTTFSKAWLEKKIMCGLCNFGCCNHKSFHVEITEEEQEKYRKKFGLDLELEWSQDGCCDLLSDDGSGCSLGDERPVFCKMYPLEPNKAGRIVLGNWSYLHCPKPQDYELDRIEDGKYHYRLIKPHKNKRDELILEDDIQNVVKEIWRQSKEALVDTYGEEFYERIKIEMKQTIKHEFF
Ga0211496_100719252F007697N/ACITSAVAKYFGLKCIITIPHYPDHIKDSYRINASLSQKFGAKVYGVGNPNISGPELDAKKLVVETGYFQIKFGMNGFQVMNTVAQQVKNIPDDVETVVGIAGSGLSMLGVAMGCKIWNKNVKTIHPVALSDYVNKNKKQSYDNLPPKYKFDGDFNVVQSYYPYQYKLKLDEDIEFDQTYEAKAWDWMVKNIKPSKKVLFWDVGIKEYDLDYIEPINWHKSEYEKIIDREIRRKHQQIEHNFF
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