Scaffold Ga0211496_10015900

Overview

Basic Information

• Taxon OID: 3300020405
• Scaffold ID: Ga0211496_10015900
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2673
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_062
• Coordinates
  • Lat. (^o): -22.3407
  • Long. (^o): 40.3444
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F029129	Metagenome / Metatranscriptome	189	Y
F030123	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211496_100159001	F030123	AGGA	MSAISKDGMDKWLDDAYPSLDKRKANLIYEIASLINDDPLSAPVLIEELVEVMFDEQIDHIEDVIVNHFGVEVYGEETV
Ga0211496_100159002	F001026	AGGAG	MKHTLELDDLELTALITHLEGQSEMMVESRLNCSNPSKLPDREEVLLNLVYAKAFTIGWDAHINPKVDFNLHQNEDRIYKYK
Ga0211496_100159004	F029129	AGGAG	MTTKTETLAPHRKFIIEVRGEELKVNKYGDKLHSLIDDLGWEYQRMGMSGRETYDEICHLLGMIPQDEVYMEI