Scaffold Ga0211659_10375252

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10375252
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 619
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010001	Metagenome / Metatranscriptome	310	Y
F021403	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_103752521	F021403	N/A	TIAPVLFLIIMKEHYDSLNPLHWWPMFWGYNAKLPEEDRITIRPLDTERIMQQHGGPLNVHIIDYQHIKFRRKKDAVIFGLRYF
Ga0211659_103752522	F010001	GAG	MQDKASKDEVKLLRAQLGNLEVQVADYQQIVKELSDKLSLYEKKYGTVFRPAKNISTQK