Scaffold Ga0211659_10167945

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211659_10167945

Scaffold Ga0211659_10167945

Overview

Basic Information
Taxon OID	3300020404 Open in IMG/M
Scaffold ID	Ga0211659_10167945 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	992
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_102
Coordinates	Lat. (^o)	-5.254	Long. (^o)	-85.2248	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058518	Metagenome	135	Y
F096197	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_101679453	F096197	AGAAGG	MTNFTKEQLKTLRNEINSLLLTHDFEETCNLKIQTLVDSCTYRGGEATFKVKVLLDGAETKEEKDLKKMAILHRLDTSKVHEYIDHKSVRYRMQLVGYKTKARKMPWIVKDCLSMSGNEYKLTDAQARQWFEYEVQP
Ga0211659_101679454	F058518	GAGG	MRYKEIVIAAEDLECDQIDTIHDAIKEHILDIGVATPKTLTGFSWRLDVRMRMD

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.