Scaffold Ga0211659_10118317

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10118317
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1213
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F015105	Metagenome / Metatranscriptome	257	Y
F040144	Metagenome	162	Y
F049033	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_101183172	F015105	AGG	MNLEQRKANLIYEIASLINDDPLSAPVLIEELVDIMFDEQIDHIEDVIVNQFGVEVYGEETV
Ga0211659_101183173	F049033	AGGAG	MRTKNKVALDSLIDNIKHTFYYVGAKGDDVDQFEIDTLHKLVDEFASQVTISDSQGQ
Ga0211659_101183174	F001479	AGGAG	MPKEMLFLCDVYTKWLKENQLPHLCASEILYGKDTMNKLTINQTYWLENFISTWDIIAQN
Ga0211659_101183176	F040144	AGGAG	MTTQLHEFYITRKCTKMEYFTVKAESLEEAKYEAEHGYDYYNFDWEEFDYETVEIKEQEIPEQQLTLSGLLV