NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10087469

Scaffold Ga0211659_10087469


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10087469 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1445
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069326Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0211659_100874692F069326N/AADAYQLIKENIDEAVEFYELEPAIVTQVLLDPSDFPRKSTPGGNGKMPDYSFLGTVKARFVESQDTGDEIDDYIKPLSPHMVAYPLIGEVVNIAKHGNQMYYYQPLNMRNHVNMNVANNVPTDPKVTAQTTEHNRNLLSEYGDVVINGRFGNGIKFGSDPFYQYPDIKITNRQSVPPQKIQDEHYPHLQNINADGSSIFITSGPAREVDALIPAAFNLTTPEVLDGDMITLNSDRLVFNSKKTDIHMFAKRNLNLSANEEINLELGLNAFGGRISLGDAESTNPMVLGNQLEDLFEKLLSAISSFSNSTSGATGVAEIADAGEVLKKDIEDISTNILPQILSDTVYIAENQSNEVTSINEVEGEVQPIVEVAGVRG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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