Scaffold Ga0211659_10086613

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10086613
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1453
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F021674	Metagenome	218	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_100866133	F006867	AGGAG	MLQDKELKELHKSIQSRCRIQPGMLVKTNAVRPLPSEPSKLALVVKVSPACSFDRDYEGAEEHIFYVCEPFDGTPSFVDYVCNMEQVS
Ga0211659_100866135	F069451	GGAGG	VKPGDLVRIRKSAIDAYSTLWFIDLAEAKAPLLLMEKLNKQHWKVMKPDGTDCFISEHKLTRRMW
Ga0211659_100866136	F021674	AGGAGG	MERETYNSRLKTNPEDIPVGSLLRIKKHCRKNNIVKQNGELAILVERPHGTYISHDVLFPSGRRTIFIPMNWEVVSYAR