Scaffold Ga0211659_10051618

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10051618
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1946
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F061779	Metagenome	131	Y
F087042	Metagenome	110	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_100516181	F006217	AGGA	MIELLLSVIEEPNQFHKYCMEKHEHWTGRAACVQELRHAQRKLEVEELRQFLKENPHYKYPGMALPNGKIKPLDVCWGSDKTYYIGSDKVKRSK
Ga0211659_100516182	F103094	GGAG	MAKKAPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTLS
Ga0211659_100516183	F005813	AGGAG	MKLYKNSNGVWAGTQLDARKYCGKDYSTVDVPTDKPNLLAFLNLNQVGSYTSNDKQGIEGEPYNLTPEALSWIRWSYDKICQGQYEDCKEMLRKGLELARDGKEST
Ga0211659_100516185	F061779	GGAGG	MLPDEMEAEKNRKMILAQADEIEILKRNVRQLQGQLQSALIHNKRLIEQNAEAMVIIGHKQQEIDSMEEV
Ga0211659_100516187	F087042	AGGAG	MKIEQICIASFKSMFDERIADGVDLTPKYIEMLVKEHCEPYMIVTQGFTHDLLANALDHMDWRYISRYLKHQADKHMYAEEFSND